DrTransformer and DrPlotter
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bad-ants-fleet
Stefan Badelt
The first release of DrTransformer as standalone package (no more ribolands). Incorporates many changes to prior versions, many of which were never officially released:
- all essential functions with major updates (expansion, coarse graining, simulation and pruning).
- interface changes and partial rewrites
- new parameters and parameter defaults
- no more plotting for DrTransformer, this is the job for DrPlotter
- new plotting layout with transcript length ticks, repaired code to enable plotting including pause sites
- using scipy and numpy for matrix exponentials (instead of treekin)
- and probably more ...