submitted to PLOS #8
Workflow file for this run
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
paths: ['README.Rmd'] | |
name: render-readme | |
jobs: | |
render-rmarkdown: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Install missing system dependencies | |
if: runner.os == 'Linux' | |
run: sudo apt-get update && sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
- uses: r-lib/actions/setup-renv@v2 | |
- name: Render Rmarkdown files and Commit Results | |
run: | | |
RMD_PATH=($(git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep '[.]Rmd$')) | |
Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f)' ${RMD_PATH[*]} | |
git config --local user.name "$GITHUB_ACTOR" | |
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
git commit ${RMD_PATH[*]/.Rmd/.md} -m 'Re-build Rmarkdown files' || echo "No changes to commit" | |
git push origin || echo "No changes to commit" |