- Fix vcf header bug: T/N SAMPLE lines are back - needed for import to SolveBio
- add strandedness: auto for -l A option in salmon
- report 10x more peaks in CHIP/ATAC-seq - use 0.05 qvalue
- fix misleading RNA-seq duplicated reads statistics: thanks @sib-bcf
- reorganize conda environments
- snpEff 5.0
- strandedness: auto
- document WGBS pipeline steps
- make --local an option, not default in bismark alignment - too slow
- bcbioRNASeq update to 0.3.44
- pureCN update to 2.0.1
- octopus update to 0.7.4
Contributors
sib-bcf