Bugfix to Summary module clustering output

[zhemingfan]

Bugfix in this module is targeted for two issues:

1. Currently, no structural variants are merged in Summary if the sorted test file (mock_dgv_annotations.txt) is provided given an exact coordinate of the variant dgv1n82. This occurs because we calculate dist = Interval((dgv_region.start), bpp.break1). Given the first entry to be 1 1 2300000 nsv482937 and a BPP with a breakpoint1 of 10001. This dist will almost always be larger than the lowest_resolution + distance, resulting in breaking out of the loop for a particular chr, missing out on any downstream SVs on the same chr.

2. Multiple SV matches on one call are being overwritten.

[codecov]

Codecov Report

Base: 86.53% // Head: 86.67% // Increases project coverage by +0.14% 🎉

Coverage data is based on head (8b932a6) compared to base (38d07c4).
Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files

@@              Coverage Diff               @@
##           develop_v3     #337      +/-   ##
==============================================
+ Coverage       86.53%   86.67%   +0.14%     
==============================================
  Files              57       57              
  Lines            9340     9342       +2     
  Branches         2407     2342      -65     
==============================================
+ Hits             8082     8097      +15     
+ Misses            775      763      -12     
+ Partials          483      482       -1     

Flag	Coverage Δ
unittests	86.67% <100.00%> (+0.14%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/mavis/summary/summary.py	64.58% <100.00%> (+9.65%)	⬆️

Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here.

☔ View full report at Codecov.
📢 Do you have feedback about the report comment? Let us know in this issue.