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Bugfix/GitHub actions timeouts turn tests on #77
Merged
elewis2
merged 20 commits into
develop
from
bugfix/github-actions-timeouts_turn_tests_on
Feb 21, 2023
Merged
Bugfix/GitHub actions timeouts turn tests on #77
elewis2
merged 20 commits into
develop
from
bugfix/github-actions-timeouts_turn_tests_on
Feb 21, 2023
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New Features: - get_statements_from_variants - helper function added. - get_term_list - helper function added. - get_rid - helper function added. - get_pharmacogenomic_info - helper function added. - get_cancer_predisposition_info - helper function added. - Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST Bugfix: - Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'. Improvements: - get_preferred_gene_name - moved to genes.py - move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py - added tests: - test_get_pharmacogenomic_info - test_get_cancer_predisposition_info Github Workflow Updates: - Drop Python 3.6 testing - actions/checkout@v3 - actions/setup-python@v3
…ion to test_genes::test_find_fusion_genes.
…t_truncating_categories and test_known_variants.
…_info, test_match_explicit_references and test_genomic_coordinates.
…cation test_known_reduced_expression.
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