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Bugfix/GitHub actions timeouts turn tests on #77

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merged 20 commits into from
Feb 21, 2023

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dustinbleile
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dustinbleile and others added 20 commits December 9, 2022 15:53
New Features:
 - get_statements_from_variants - helper function added.
 - get_term_list - helper function added.
 - get_rid - helper function added.
 - get_pharmacogenomic_info - helper function added.
 - get_cancer_predisposition_info - helper function added.
 - Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
Bugfix:
 - Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
Improvements:
 - get_preferred_gene_name - moved to genes.py
 - move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
 - added tests:
   - test_get_pharmacogenomic_info
   - test_get_cancer_predisposition_info
Github Workflow Updates:
 - Drop Python 3.6 testing
 - actions/checkout@v3
 - actions/setup-python@v3
…t_truncating_categories and test_known_variants.
…_info, test_match_explicit_references and test_genomic_coordinates.
@elewis2 elewis2 merged commit 15952ea into develop Feb 21, 2023
@dustinbleile dustinbleile deleted the bugfix/github-actions-timeouts_turn_tests_on branch February 22, 2023 23:10
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2 participants