Organise methods

docs/api.rst

@@ -86,6 +86,9 @@ Dataset
 Methods
 =======
 
+Allele and Genotype Analysis
+----------------------------
+
 .. autosummary::
    :toctree: generated/
 
@@ -95,34 +98,69 @@ Methods
    count_cohort_alleles
    count_variant_alleles
    count_variant_genotypes
+   observed_heterozygosity
+   variant_stats
+
+Population and Cohort Genetics
+------------------------------
+
+.. autosummary::
+   :toctree: generated/
+
    divergence
    diversity
    Fst
+   Tajimas_D
+   Weir_Goudet_beta
    Garud_H
-   genee
+   pbs
+
+Pedigree and Relationship
+------------------------
+
+.. autosummary::
+   :toctree: generated/
+
    genomic_relationship
-   gwas_linear_regression
-   hardy_weinberg_test
+   pc_relate
+   pedigree_contribution
+   pedigree_inbreeding
+   pedigree_inverse_kinship
+   pedigree_kinship
    hybrid_inverse_relationship
    hybrid_relationship
    identity_by_state
-   individual_heterozygosity
+
+Linkage Disequilibrium and Heterozygosity
+-----------------------------------------
+
+.. autosummary::
+   :toctree: generated/
+
    ld_matrix
    ld_prune
+   individual_heterozygosity
+
+Genetic Association and Regression
+----------------------------------
+
+.. autosummary::
+   :toctree: generated/
+
+   gwas_linear_regression
+   regenie
+   hardy_weinberg_test
+   genee
+
+Miscellaneous and Utilities
+----------------------------
+
+.. autosummary::
+   :toctree: generated/
+
    maximal_independent_set
-   observed_heterozygosity
    pairwise_distance
-   pbs
-   pedigree_contribution
-   pedigree_inbreeding
-   pedigree_inverse_kinship
-   pedigree_kinship
-   pc_relate
-   regenie
    sample_stats
-   Tajimas_D
-   variant_stats
-   Weir_Goudet_beta
 
 Utilities
 =========