Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error rates "error" #2025

Open
Kachn42 opened this issue Sep 21, 2024 · 2 comments
Open

Error rates "error" #2025

Kachn42 opened this issue Sep 21, 2024 · 2 comments

Comments

@Kachn42
Copy link

Kachn42 commented Sep 21, 2024

Hi, I am trying to learn the error rates using DADA 2, i was able to do it for forward sequence, unfornutaly, fot reversed it always shows

"Error rates could not be estimated (this is usually because of very few reads).
Error in getErrors(err, enforce = TRUE) : Error matrix is NULL."

I am working with metagenomic data.

Thank you for any help :)

@benjjneb
Copy link
Owner

I am working with metagenomic data.

If you are working with shotgun metagenomic data, DADA2 is not an appropriate method.

@Kachn42
Copy link
Author

Kachn42 commented Sep 30, 2024

Snímek obrazovky 2024-09-30 111155
I am working with Ilumina amplicon sequencing data, 16S 515f and 926 primers, in previous dataset, the pipeline work perfectly, unfortunatelly this error always pop up ...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants