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104 Open 1,872 Closed
104 Open 1,872 Closed
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Issues list

Questions about chimera filtering
#2030 opened Sep 30, 2024 by hjarnek
1
filterAndTrim returns no reads with least restrictive parameters
#2029 opened Sep 29, 2024 by HaigBishop
2
post-taxonomy assignment issue with data transformation
#2028 opened Sep 26, 2024 by TamarKopadze
Reads Loss during DADA2 run
#2027 opened Sep 25, 2024 by mentorwan
2
assigntaxonomy
#2026 opened Sep 23, 2024 by UniAlberta
6
Error rates "error"
#2025 opened Sep 21, 2024 by Kachn42
2
How does a small database affect the taxonomic assignment?
#2023 opened Sep 18, 2024 by Fmicro23
1
Collapsing ASVs into OTUs?
#2021 opened Sep 16, 2024 by marinachen
1
truncLenKeep enhancement
#2020 opened Sep 15, 2024 by LukeLikesDirt
3
16S data treatment with very low abundance
#2019 opened Sep 13, 2024 by karenandreac
1
DADA2 analysis for two different platforms MISEQ and Novaseq -Merging of sequence table
#2018 opened Sep 13, 2024 by Jayakanthankk
2
Large number of (spurious ?) ASVs Novaseq
#2017 opened Sep 12, 2024 by msalamon2
6
Parameters optimal to produce COI exact variants.
#2015 opened Sep 10, 2024 by aimirza
4
Formatting RDP version 19 taxonomic database for DADA2 enhancement Priority
#2014 opened Sep 5, 2024 by jheiman06
1
Merged files, where should I start in the pipeline and how?
#2012 opened Sep 5, 2024 by seqlt
2
Different Illumina sequencing kits (v2 and v3) - preprocessing
#2011 opened Sep 4, 2024 by luizastein
3
Large variability in sequence lengths after merging paired reads
#2010 opened Sep 3, 2024 by alannajmcc16
1
Large amount of losses in read number during processing: PacBio Hifi reads
#2009 opened Aug 30, 2024 by HitMonk
4
Is filterAndTrim effect to NA results or because minBoot? What parameter setting ​​should be used appropriately?
#2008 opened Aug 30, 2024 by WP-SMILE
5
filterAndTrim
#2007 opened Aug 27, 2024 by AliciaBalbin
1
FilterAndTrim discards huge amount of reads with trunclen option
#2006 opened Aug 23, 2024 by sofiehn
9
learnErrors() on PacBio 16S very slow
#2005 opened Aug 22, 2024 by trawler-crawler
7
Incertae_sedis VS NA Taxonomic Assignment
#2004 opened Aug 22, 2024 by mya-darsan
1
about plotQualityProfile and derepFastq function
#2003 opened Aug 22, 2024 by dstrgcv
1
Issue with Primer Removal- Residual Primers After Cutadapt
#2001 opened Aug 16, 2024 by alannajmcc16
2
ProTip! no:milestone will show everything without a milestone.