post-taxonomy assignment issue with data transformation

[TamarKopadze]

Hello,

I am trying to this following code for my phyloseq object (I'm working on fungi DNA sequence data)

phyloseq1 <- subset_taxa(phyloseq, Kingdom %in% c('Fungi'))

but I keep getting this error message:
Error in dimnames(x) <- dn :
length of 'dimnames' [1] not equal to array extent

I tried looking at number of sequences among the phyloseq object and they match. I also looked at if I had NAs for Kingdom but I don't. I was wondering if anyone knew how to fix this issue.

[benjjneb]

This issue doesn't deal with the dada2 R package, and would be better suited for the phyloseq package issues page.