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1. epipack epipack Public

   Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.

   Python 32 3

2. tacoma tacoma Public

   Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.

   C++ 105 7

3. netwulf netwulf Public

   Interactive visualization of networks based on Ulf Aslak's d3 web app.

   Python 296 27

4. qsuite qsuite Public

   command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworks

   Python 8 1

5. binpacking binpacking Public

   Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.

   Python 91 15

6. reaction-diffusion reaction-diffusion Public

   Some Python examples to obtain reaction-diffusion results and animations.

   Jupyter Notebook 88 20