Test

feat: genome querying by ID or by taxon ID #151

	name: Test

	on:
	push:
	branches:
	- main
	pull_request:

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [ "3.10", "3.12" ]
	services:
	postgres:
	image: postgres:16
	env:
	POSTGRES_DB: postgres
	POSTGRES_PASSWORD: postgres
	POSTGRES_USER: postgres
	ports:
	- 5432:5432
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	steps:
	- name: Tweak Postgres
	run: \|
	docker exec ${{ job.services.postgres.id }} sh -c 'echo "max_connections=200" >> /var/lib/postgresql/data/postgresql.conf'
	docker kill --signal=SIGHUP ${{ job.services.postgres.id }}
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	name: Set up Python
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install poetry
	run: pip install poetry
	- name: Install dependencies
	run: poetry install
	- name: Test
	run: \|
	export DATABASE_URI="postgres://postgres:postgres@localhost:5432/postgres"
	poetry run pytest -svv --cov=bento_reference_service --cov-branch
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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