Add new color_labels filter to add color scalars to labeled data (#…
#239
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Integration Tests | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 4 * * *" | |
| push: | |
| tags: | |
| - "*" | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| ALLOW_PLOTTING: true | |
| SHELLOPTS: "errexit:pipefail" | |
| jobs: | |
| # For now this is just MNE-Python, but others could be added | |
| mne: | |
| name: MNE-Python | |
| runs-on: ubuntu-22.04 | |
| env: | |
| DISPLAY: ":99.0" | |
| MNE_LOGGING_LEVEL: "info" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - run: git clone --depth=1 https://github.com/mne-tools/mne-python.git --branch main --single-branch | |
| - run: ./mne-python/tools/setup_xvfb.sh | |
| - name: Install MNE dependencies | |
| run: pip install numpy scipy matplotlib nibabel "PyQt6-Qt6!=6.6.0,!=6.7.0" "PyQt6!=6.6.0" qtpy ipympl pytest pytest-cov pytest-harvest pytest-timeout sphinx-gallery nbformat nbclient imageio imageio-ffmpeg | |
| - name: Install PyVista | |
| run: pip install -ve . # pyvista | |
| - name: Install PyVistaQt main | |
| run: pip install -v git+https://github.com/pyvista/pyvistaqt.git | |
| - name: Install MNE | |
| run: pip install -ve . # mne | |
| working-directory: mne-python | |
| - name: MNE Info | |
| run: mne sys_info -p | |
| working-directory: mne-python | |
| - run: ./tools/get_testing_version.sh | |
| working-directory: mne-python | |
| - uses: actions/cache@v4 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| - run: ./tools/github_actions_download.sh | |
| working-directory: mne-python | |
| - run: pytest mne/viz/_brain mne/viz/tests/test_3d.py mne/viz/backends | |
| working-directory: mne-python | |
| pyvistaqt: | |
| name: PyVistaQt | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - run: git clone https://github.com/pyvista/pyvistaqt.git --single-branch | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - run: pip install -ve ./pyvistaqt -r ./pyvistaqt/requirements_test.txt "PyQt6-Qt6!=6.6.0,!=6.7.0" "PyQt6!=6.6.0" | |
| - run: pip install -ve . | |
| - run: pytest ./tests | |
| working-directory: pyvistaqt | |
| geovista: | |
| name: GeoVista | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CARTOPY_SHARE_DIR: ~/.local/share/cartopy | |
| GEOVISTA_POOCH_MUTE: true | |
| steps: | |
| - uses: awalsh128/cache-apt-pkgs-action@v1.1.3 | |
| with: | |
| packages: libgl1-mesa-glx xvfb | |
| version: 3.0 | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - run: git clone https://github.com/bjlittle/geovista.git --single-branch | |
| - name: Install PyVista | |
| run: pip install -ve . # pyvista | |
| - name: Install GeoVista | |
| run: pip install -ve .[test,exam,cmap] # geovista | |
| working-directory: geovista | |
| - name: Download cartopy assets | |
| run: | | |
| mkdir -p ${CARTOPY_SHARE_DIR} | |
| python -m cartopy.feature.download physical --output ${CARTOPY_SHARE_DIR} --no-warn | |
| - run: pytest | |
| working-directory: geovista | |
| trame: | |
| name: Trame | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install PyVista | |
| run: pip install -ve .[test] | |
| - name: Install requirements | |
| run: | | |
| pip install -r examples_trame/requirements.txt | |
| - name: Run examples | |
| working-directory: examples_trame | |
| run: pytest -v ./tests |