Add bio.tools entry to MuSiC deconvolution tools (#1543)

* Add bio tools to music deconvolution macros * Update construct_eset.xml * Update inspect_eset.xml * Update manipulate_eset.xml * Update music_compare.xml * Update music_deconvolution.xml --------- Co-authored-by: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com>
bgruening · Nov 6, 2024 · 7b4e1e8 · 7b4e1e8
1 parent 7de9687
commit 7b4e1e8
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Showing 6 changed files with 14 additions and 4 deletions.
diff --git a/tools/music_deconvolution/construct_eset.xml b/tools/music_deconvolution/construct_eset.xml
@@ -4,6 +4,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
 cat '$conf' >> /dev/stderr &&
@@ -228,4 +229,4 @@ For more options and information, consult `the manual <http://www.bioconductor.o
             }
         </citation>
     </citations>
-</tool>
+</tool>
diff --git a/tools/music_deconvolution/inspect_eset.xml b/tools/music_deconvolution/inspect_eset.xml
@@ -4,6 +4,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>  
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 cat '$conf' >> /dev/stderr &&
@@ -123,4 +124,4 @@ For more options and information, consult `the manual <http://www.bioconductor.o
             }
         </citation>
     </citations>
-</tool>
+</tool>
diff --git a/tools/music_deconvolution/macros.xml b/tools/music_deconvolution/macros.xml
@@ -9,6 +9,11 @@
          in 21.09
          <token name="@RDATATYPE@">rdata.eset</token>
     -->
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">music_deconvolution</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@" >music-deconvolution</requirement>

diff --git a/tools/music_deconvolution/manipulate_eset.xml b/tools/music_deconvolution/manipulate_eset.xml
@@ -4,6 +4,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 cat '$conf' >> /dev/stderr &&

diff --git a/tools/music_deconvolution/music_compare.xml b/tools/music_deconvolution/music_compare.xml
@@ -29,6 +29,7 @@
             </repeat>
         </macro>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements" />
     <command detect_errors="exit_code" ><![CDATA[
 cat '$conf' >> /dev/stderr &&
@@ -220,4 +221,4 @@ The resulting plots will combine all the bulk datasets and their learned cell ty
     <citations>
         <citation type="doi">https://doi.org/10.1038/s41467-018-08023-x</citation>
     </citations>
-</tool>
+</tool>
diff --git a/tools/music_deconvolution/music_deconvolution.xml b/tools/music_deconvolution/music_deconvolution.xml
@@ -4,6 +4,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements" />
     <command detect_errors="exit_code" ><![CDATA[
 cat '$conf' >> /dev/stderr &&
@@ -313,4 +314,4 @@ Solid tissues often contain closely related cell types which leads to collineari
     <citations>
         <citation type="doi">https://doi.org/10.1038/s41467-018-08023-x</citation>
     </citations>
-</tool>
+</tool>