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As-is, the run.py will look for T1 images with "ses-" in the filename, but the directory structure is still: BIDS/sub-#/anat/sub-#_ses-# rather than BIDS/sub-#/ses-#/sub-#_ses-#
The text was updated successfully, but these errors were encountered:
FWIW, the fix is as simple as having line 19 in run.py change from: glob(join(basedir,"sub-%s"%subject_label, "anat", "sub-%s_ses-*_T1w.nii.gz" % (subject_label)))
to glob(join(basedir,"sub-%s"%subject_label, "ses-*", "anat", "sub-%s_ses-*_T1w.nii.gz" % (subject_label)))
celstark
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Apr 6, 2018
As-is, the run.py will look for T1 images with "ses-" in the filename, but the directory structure is still:
BIDS/sub-#/anat/sub-#_ses-#
rather thanBIDS/sub-#/ses-#/sub-#_ses-#
The text was updated successfully, but these errors were encountered: