Merge pull request #110 from bids-standard/create-pull-request/patch

Changes by create-pull-request action
bids-standard · Jan 15, 2021 · a7ddab1 · a7ddab1
2 parents 2082c76 + 3778f0b
commit a7ddab1
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Showing 4 changed files with 263 additions and 10 deletions.
diff --git a/schema/datatypes/anat.json b/schema/datatypes/anat.json
@@ -3,17 +3,12 @@
     "suffixes": [
       "T1w",
       "T2w",
-      "T1rho",
-      "T1map",
-      "T2map",
-      "T2star",
+      "PDw",
+      "T2starw",
       "FLAIR",
-      "FLASH",
-      "PD",
-      "PDmap",
-      "PDT2",
       "inplaneT1",
       "inplaneT2",
+      "PDT2",
       "angio"
     ],
     "extensions": [
@@ -31,6 +26,42 @@
       "part": "optional"
     }
   },
+  {
+    "suffixes": [
+      "T1map",
+      "T2map",
+      "T2starmap",
+      "R1map",
+      "R2map",
+      "R2starmap",
+      "PDmap",
+      "MTRmap",
+      "MTsat",
+      "UNIT1",
+      "T1rho",
+      "MWFmap",
+      "MTVmap",
+      "PDT2map",
+      "Chimap",
+      "TB1map",
+      "RB1map",
+      "S0map",
+      "M0map"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional"
+    }
+  },
   {
     "suffixes": [
       "defacemask"
@@ -49,5 +80,131 @@
       "rec": "optional",
       "mod": "optional"
     }
+  },
+  {
+    "suffixes": [
+      "MESE",
+      "MEGRE"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "echo": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "VFA"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "flip": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "IRT1"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "inv": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "MP2RAGE"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "echo": "optional",
+      "flip": "required",
+      "inv": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "MPM",
+      "MTS"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "echo": "optional",
+      "flip": "required",
+      "mt": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "MTR"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "mt": "required",
+      "part": "optional"
+    }
   }
 ]
diff --git a/schema/datatypes/fmap.json b/schema/datatypes/fmap.json
@@ -23,7 +23,8 @@
   },
   {
     "suffixes": [
-      "epi"
+      "epi",
+      "m0scan"
     ],
     "extensions": [
       ".nii.gz",
@@ -38,5 +39,46 @@
       "dir": "required",
       "run": "optional"
     }
+  },
+  {
+    "suffixes": [
+      "TB1DAM"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "flip": "required",
+      "part": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "TB1EPI"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "run": "optional",
+      "acq": "optional",
+      "ce": "optional",
+      "rec": "optional",
+      "echo": "required",
+      "flip": "required",
+      "part": "optional"
+    }
   }
 ]
diff --git a/schema/datatypes/perf.json b/schema/datatypes/perf.json
@@ -0,0 +1,53 @@
+[
+  {
+    "suffixes": [
+      "asl",
+      "m0scan"
+    ],
+    "extensions": [
+      ".nii.gz",
+      ".nii",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "acq": "optional",
+      "rec": "optional",
+      "dir": "optional",
+      "run": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "aslcontext"
+    ],
+    "extensions": [
+      ".tsv",
+      ".json"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "acq": "optional",
+      "rec": "optional",
+      "dir": "optional",
+      "run": "optional"
+    }
+  },
+  {
+    "suffixes": [
+      "asllabeling"
+    ],
+    "extensions": [
+      ".jpg"
+    ],
+    "entities": {
+      "sub": "required",
+      "ses": "optional",
+      "acq": "optional",
+      "rec": "optional",
+      "run": "optional"
+    }
+  }
+]
diff --git a/schema/modalities.json b/schema/modalities.json
@@ -5,7 +5,8 @@
       "anat",
       "dwi",
       "fmap",
-      "func"
+      "func",
+      "perf"
     ]
   },
   "eeg": {