Doc: Typo fixes in comments and helptext

+bids/layout.m

@@ -1,7 +1,7 @@
 function BIDS = layout(root)
-% Parse a directory structure formated according to the BIDS standard
+% Parse a directory structure formatted according to the BIDS standard
 % FORMAT BIDS = bids.layout(root)
-% root   - directory formated according to BIDS [Default: pwd]
+% root   - directory formatted according to BIDS [Default: pwd]
 % BIDS   - structure containing the BIDS file layout
 %
 % See also:
@@ -132,7 +132,7 @@
 %==========================================================================
 function subject = parse_subject(p, subjname, sesname)
 % For each modality (anat, func, eeg...) all the files from the
-% corresponding directory are listed and their filename parsed with extra
+% corresponding directory are listed and their filenames parsed with extra
 % BIDS valid entities listed (e.g. 'acq','ce','rec','fa'...).
 
 subject.name    = subjname;   % subject name ('sub-<participant_label>')

+bids/private/parse_filename.m

@@ -25,7 +25,7 @@
 
 filename = file_utils(filename,'filename');
 
-%-Identify all the BIDS entitiy-label pairs present in the filename (delimited by "_")
+%-Identify all the BIDS entity-label pairs present in the filename (delimited by "_")
 % https://bids-specification.readthedocs.io/en/stable/99-appendices/04-entity-table.html
 [parts, dummy] = regexp(filename,'(?:_)+','split','match');
 p.filename = filename;

+bids/report.m

@@ -3,7 +3,7 @@ function report(BIDS, Subj, Ses, Run, ReadNII)
 % FORMAT bids.report(BIDS, Subj, Ses, Run, ReadNII)
 %
 % INPUTS:
-% - BIDS: directory formated according to BIDS [Default: pwd]
+% - BIDS: directory formatted according to BIDS [Default: pwd]
 %
 % - Subj: Specifies which subject(s) to take as template.
 % - Ses:  Specifies which session(s) to take as template. Can be a vector.
@@ -36,7 +36,7 @@ function report(BIDS, Subj, Ses, Run, ReadNII)
 % - deal with DWI bval/bvec values not read by bids.query
 % - write output to a txt file?
 % - deal with "EEG" / "MEG"
-% - deal wiht "events": compute some summary statistics as suggested in
+% - deal with "events": compute some summary statistics as suggested in
 % COBIDAS report
 % - report summary statistics on participants as suggested in COBIDAS report
 % - check if all subjects have the same content?
@@ -249,7 +249,7 @@ function report(BIDS, Subj, Ses, Run, ReadNII)
                     'dwi', '', '', ReadNII);
 
                 % dirty hack to try to look into the BIDS structure as bids.query does not
-                % support querying directly for bval anb bvec
+                % support querying directly for bval and bvec
                 try
                     acq_param.n_vecs = num2str(size(BIDS.subjects(Subj).dwi.bval,2));
                     %             acq_param.bval_str = ???

+bids/validate.m

@@ -1,7 +1,7 @@
 function [sts, msg] = validate(root)
 % BIDS Validator
 % FORMAT [sts, msg] = bids.validate(root)
-% root    - directory formated according to BIDS [Default: pwd]
+% root    - directory formatted according to BIDS [Default: pwd]
 % sts     - 0 if successful
 % msg     - warning and error messages
 %__________________________________________________________________________