Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[SCHEMA] Allow physio files for anat datatype #1961

Merged
merged 5 commits into from
Oct 17, 2024

Conversation

rwblair
Copy link
Member

@rwblair rwblair commented Oct 17, 2024

Issue outlined in bids-standard/bids-validator#2164

This would fail to cover echo, part, and chunk entities which are legal for anatomical images and so too would be legal in the physio filenames.

Copy link

codecov bot commented Oct 17, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.87%. Comparing base (7ddb7be) to head (2acfcce).
Report is 1 commits behind head on master.

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #1961   +/-   ##
=======================================
  Coverage   86.87%   86.87%           
=======================================
  Files          16       16           
  Lines        1410     1410           
=======================================
  Hits         1225     1225           
  Misses        185      185           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

src/schema/rules/files/raw/task.yaml Outdated Show resolved Hide resolved
src/schema/rules/files/raw/task.yaml Outdated Show resolved Hide resolved
src/schema/rules/files/raw/task.yaml Outdated Show resolved Hide resolved
rwblair and others added 3 commits October 17, 2024 10:29
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
@effigies effigies added schema Issues related to the YAML schema representation of the specification. Patch version release. exclude-from-changelog This item will not feature in the automatically generated changelog physio labels Oct 17, 2024
@effigies
Copy link
Collaborator

Implements a change agreed upon in #513.

Copy link
Collaborator

@Remi-Gau Remi-Gau left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Good with me.

@effigies effigies merged commit 790c0fb into bids-standard:master Oct 17, 2024
27 checks passed
effigies added a commit to bids-standard/legacy-validator that referenced this pull request Oct 21, 2024
yarikoptic added a commit to yarikoptic/bids-specification that referenced this pull request Oct 28, 2024
…ttype

* commit 'v1.10.0-35-g5f7004819': (218 commits)
  Include entity-less "scans.json" into an example of inheritance principle (bids-standard#1945)
  fix(checks): Enforce timing mutual exclusions on BOLD/ASL data only (bids-standard#1969)
  refactor contributing (bids-standard#1965)
  [pre-commit.ci] pre-commit autoupdate (bids-standard#1967)
  [SCHEMA] Allow physio files for anat datatype (bids-standard#1961)
  [pre-commit.ci] pre-commit autoupdate
  Add an empty line in hope to get table rendered properly in "Ordering rules" section (bids-standard#1953)
  schema: add check for duplicate READMEs (bids-standard#1952)
  [MAINT] switch bidsschematools to pyproject.toml (bids-standard#1948)
  fix(schema): Disable TaskName check for channels and markers files
  Permit and warn on task/acquisition/run for electrodes and coordsystems
  [FIX] Allow (but discourage) task entity for coordsystem.json
  fix(schema): Limit MRI metadata checks to NIfTIs
  fix: Only check for sorted times in arrays
  py3.13 (bids-standard#1947)
  [pre-commit.ci] pre-commit autoupdate (bids-standard#1946)
  [FIX] Update changelog links to avoid redirects (bids-standard#1944)
  [ENH] Update DWI suffixes to include most common scanner derivatives (bids-standard#1864)
  [pre-commit.ci] pre-commit autoupdate
  [MAINT] Update Release_Protocol.md
  ...
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
exclude-from-changelog This item will not feature in the automatically generated changelog physio schema Issues related to the YAML schema representation of the specification. Patch version release.
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants