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PXD011153 project annotation #643

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May 16, 2022
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PXD011153 project annotation #643

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7 changes: 7 additions & 0 deletions annotated-projects/PXD011153/PXD011153.tsv
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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[developmental stage] characteristics[disease] characteristics[biological replicate] assay name technology type comment[technical replicate] comment[data file] comment[fraction identifier] comment[label] comment[cleavage agent details] comment[instrument] comment[file uri] comment[modification parameters] comment[modification parameters] comment[precursor mass tolerance] comment[modification parameters] comment[Proteomics Data Acquisition Method] comment[dissociation method] factor value[phenotype]
control 1 Mus musculus spleen not applicable not applicable schistosomiasis 1 control1 proteomic profiling by mass spectrometry 1 Control1.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Control1.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000133 control
control 2 Mus musculus spleen not applicable not applicable schistosomiasis 2 control2 proteomic profiling by mass spectrometry 1 Control2.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Control2.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000133 control
control 3 Mus musculus spleen not applicable not applicable schistosomiasis 3 control3 proteomic profiling by mass spectrometry 1 Control3.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Control3.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000134 control
infected 1 Mus musculus spleen not applicable not applicable schistosomiasis 4 infected1 proteomic profiling by mass spectrometry 1 Infected1.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Infected1.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000135 infected
infected 2 Mus musculus spleen not applicable not applicable schistosomiasis 5 infected2 proteomic profiling by mass spectrometry 1 Infected2.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Infected2.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000136 infected
infected 3 Mus musculus spleen not applicable not applicable schistosomiasis 6 infected3 proteomic profiling by mass spectrometry 1 Infected3.raw 1 AC=MS:1002038;NT=label free sample AC=MS:1001251;NT=Trypsin AC=MS:1001911;NT=Q Exactive https://ftp.ebi.ac.uk/pride-archive/2019/02/PXD011153/Infected3.raw NT=Oxidation; MT=Variable; AC=Unimod:35; TA=M NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed 10 ppm NT=Oxidation; MT=Fixed; AC=Unimod:4; TA=C DDA NT=collision-induced dissociation;AC=MS:1000137 infected