Update filters nextflow.config

based on comment #301 (comment) and the corresponding benchamrks I have updated the filters and parameters for LFQ
bigbio · Oct 11, 2023 · c1b5874 · c1b5874
1 parent 3cbfecb
commit c1b5874
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -156,8 +156,8 @@ params {
     // ProteomicsLFQ MBR parameters
     targeted_only            = true // If false MBR will be applied for quantification of all proteins
     feature_with_id_min_score = 0.10
-    feature_without_id_min_score = 0.90
-    lfq_intensity_threshold = 10000
+    feature_without_id_min_score = 0.75
+    lfq_intensity_threshold = 1000
 
     // Bruker data
     convert_dotd            = false