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Update branch from dev #401

Merged
merged 14 commits into from
Aug 14, 2024
Merged

Update branch from dev #401

merged 14 commits into from
Aug 14, 2024

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ypriverol
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nf-test test main.nf.test -profile test,docker).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Aug 14, 2024 •
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nf-core lint overall result: Passed ✅

Posted for pipeline commit 77a8e59

+| ✅ 294 tests passed       |+
#| ❔   4 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-08-14 10:36:46

@ypriverol
nf-core version defined in .nf-core.yml
2d36084
@ypriverol
changed in dumpsofware nf-core module
17e89bb
@ypriverol
Template update for nf-core/tools version 2.14.1
d0c466a
@ypriverol
Merge branch 'TEMPLATE' of https://github.com/ypriverol/quantms into dev
1e63997 
# Conflicts:
#	.github/workflows/ci.yml
#	.nf-core.yml
#	conf/modules.config
#	conf/test.config
#	conf/test_full.config
#	modules.json
#	modules/nf-core/fastqc/main.nf
#	nextflow.config
#	workflows/quantms.nf
@ypriverol ypriverol mentioned this pull request Aug 14, 2024
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@ypriverol ypriverol requested a review from daichengxin August 14, 2024 10:40
@ypriverol ypriverol merged commit 93693e3 into bigbio:dev Aug 14, 2024
17 checks passed
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@daichengxin daichengxin daichengxin approved these changes

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3 participants
@ypriverol @daichengxin @fabianegli