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Big Data Genomics

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  1. adam adam Public

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    Scala 1k 311

  2. mango mango Public

    A scalable genome browser. Apache 2 licensed.

    Scala 125 32

  3. avocado avocado Public

    A Variant Caller, Distributed. Apache 2 licensed.

    Scala 71 42

  4. bdg-formats bdg-formats Public

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 39 35

  5. cannoli cannoli Public

    Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

    Scala 39 17

  6. eggo eggo Public

    Ready-to-go Parquet-formatted public 'omics datasets

    Python 30 8

Repositories

Showing 10 of 23 repositories
  • adam Public

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    bigdatagenomics/adam’s past year of commit activity
    Scala 1,004 Apache-2.0 311 34 3 Updated Dec 7, 2024
  • cannoli Public

    Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

    bigdatagenomics/cannoli’s past year of commit activity
    Scala 39 Apache-2.0 17 1 0 Updated Nov 9, 2024
  • bdg-formats Public

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    bigdatagenomics/bdg-formats’s past year of commit activity
    Shell 39 Apache-2.0 35 1 1 Updated Oct 23, 2024
  • utils Public

    General utility code used across BDG products. Apache 2 licensed.

    bigdatagenomics/utils’s past year of commit activity
    Scala 18 Apache-2.0 26 1 0 Updated Jan 3, 2024
  • bigdatagenomics.github.io Public

    Web Site for the Big Data Genomics Group

    bigdatagenomics/bigdatagenomics.github.io’s past year of commit activity
    HTML 10 7 0 0 Updated Sep 3, 2023
  • mango Public

    A scalable genome browser. Apache 2 licensed.

    bigdatagenomics/mango’s past year of commit activity
    Scala 125 Apache-2.0 32 57 7 Updated Dec 2, 2022
  • convert Public

    Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

    bigdatagenomics/convert’s past year of commit activity
    Java 0 Apache-2.0 5 2 0 Updated Dec 2, 2022
  • workflows Public

    Toil workflows for bigdatagenomics tools. Apache 2 licensed.

    bigdatagenomics/workflows’s past year of commit activity
    Python 5 Apache-2.0 5 8 1 Updated Apr 22, 2021
  • jenkins-docker Public
    bigdatagenomics/jenkins-docker’s past year of commit activity
    Dockerfile 1 Apache-2.0 2 0 1 Updated Aug 23, 2020
  • deca Public Forked from mlinderm/deca

    Distributed exome CNV analyzer. Apache 2 licensed.

    bigdatagenomics/deca’s past year of commit activity
    Scala 3 4 9 1 Updated Oct 15, 2019
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