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NullPointerException at htsjdk CramNormalizer.getByteOrDefault #1993
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Does Hadoop-BAM support reading the reference for CRAM from HDFS? If I used one mounted on shared disk, I'm seeing validation errors instead of NPEs
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Does the CRAM codepath use NIO? If no, then HDFS won't be supported. |
Also, shouldn't this be opened against an upstream repo? |
According to the Hadoop-BAM docs HDFS should be supported for CRAM references.
Filed upstream issue HadoopGenomics/Hadoop-BAM#201 |
Closing as WontFix |
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