We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
DB Type=Flag VCF INFO field should be displayed as true/false
DB
true/false
scala> printInfoFields(variants, Seq("DB", "dbsnp")) Info Header Lines INFO=<ID=DB,Number=0,Type=Flag,Description="Membership in dbSNP"> INFO=<ID=dbsnp,Number=1,Type=String,Description="dbSNP identifier"> Variant Info Fields +----------------+--------+--------+-----+-----+----+--------------+ | Reference Name | Start | End | Ref | Alt | DB | dbsnp | +----------------+--------+--------+-----+-----+----+--------------+ | 1 | 865594 | 865595 | A | G | | rs903331232 | | 1 | 874490 | 874491 | C | T | | rs1441881282 | | 1 | 877522 | 877523 | C | G | | rs200195897 | | 1 | 878374 | 878375 | C | T | | | | 1 | 879285 | 879286 | A | C | | rs770278990 | | 1 | 879374 | 879375 | C | T | | rs761448939 | | 1 | 881801 | 881802 | C | T | | rs777256112 | | 1 | 890251 | 890252 | A | G | | rs185038034 | | 1 | 896896 | 896897 | C | T | | rs777857163 | | 1 | 897738 | 897739 | T | C | | | +----------------+--------+--------+-----+-----+----+--------------+
The text was updated successfully, but these errors were encountered:
Closing as not an issue, "DB" is not present in INFO attributes, it is mapped to the VariantAnnotation attribute dbSnp.
"DB"
dbSnp
Sorry, something went wrong.
No branches or pull requests
DB
Type=Flag VCF INFO field should be displayed astrue/false
The text was updated successfully, but these errors were encountered: