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Provide access to header to model conversions #2304

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heuermh opened this issue Mar 18, 2021 · 0 comments · Fixed by #2305
Closed

Provide access to header to model conversions #2304

heuermh opened this issue Mar 18, 2021 · 0 comments · Fixed by #2305
Milestone
0.35.0

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@heuermh
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heuermh commented Mar 18, 2021 

val samHeader = ...
val references = SAMRecordConverter.references(header)
val readGroups = SAMRecordConverter.readGroups(header)
val processingSteps = SAMRecordConverter.processingSteps(header)

val vcfHeader = ...
val headerLines = VariantContextConverter.headerLines(vcfHeader)
val samples = VariantContextConverter.samples(vcfHeader)
val references = VariantContextConverter.references(vcfHeader)
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[ADAM-2304] Provide access to header to model conversions heuermh/adam
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