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Issues list

[AVOCADO] Update ADAM dependency to 0.26.0.
#307 opened Nov 13, 2018 by heuermh Loading…
3
Update ADAM dependency to 0.26.0
#306 opened Nov 13, 2018 by heuermh
Unable to locate file from biallelicGenotyper in jointer
#305 opened Oct 8, 2018 by ggittu
Read group dictionary contains multiple samples with identical read group names.
#303 opened Jul 1, 2018 by shukwong
Per position allele count reporting utility ( like bam-readcount)
#297 opened Feb 20, 2018 by jpdna Loading…
5
[AVOCADO-295] Set correct index when checking quality score during variant discovery.
#296 opened Feb 19, 2018 by fnothaft Loading… 0.2.0
2
distribution does not include the avocado jar files
#290 opened Jan 18, 2018 by pbashyal-nmdp 0.2.0
Write original genotype prior to joint genotyping enhancement
#286 opened Jan 8, 2018 by fnothaft
1 task
Calling with Avocado using the "hive" range partitioned data
#283 opened Jan 6, 2018 by jpdna
Variant Calling+Variant Filtering+ Variant Annotation
#279 opened Oct 26, 2017 by Rokshan2016
Output/Single Parquet File/
#277 opened Oct 25, 2017 by Rokshan2016
Support banded reference model enhancement
#276 opened Oct 25, 2017 by fnothaft
@fnothaft
[AVOCADO-274] Add flag to emit all genotyped variants, regardless of quality.
#275 opened Oct 24, 2017 by fnothaft Loading…
1
BiallelicGenotyper needs to be able to skip filtration bug enhancement
#274 opened Oct 24, 2017 by fnothaft
@fnothaft
Benchmark against Precision FDA or other "truth-sets"
#271 opened Oct 16, 2017 by jpdna
1
Spark Version
#261 opened Sep 28, 2017 by Rokshan2016
1
BUILD FAILURE
#251 opened Jul 6, 2017 by shibuvp
28
DiscoverVariants runtime has big difference between repeated run with the same args.
#231 opened Apr 15, 2017 by xubo245
4
Args4j version discrepency
#225 opened Apr 3, 2017 by devin-petersohn
Add test coverage for CLI enhancement
#216 opened Feb 28, 2017 by fnothaft
@fnothaft
Pass assembly variants to realigner as knowns
#208 opened Feb 28, 2017 by fnothaft Loading…
3
Add trim-through in assembly code enhancement
#201 opened Jan 17, 2017 by fnothaft
@fnothaft
Realignment using assembly to pick variants
#200 opened Jan 17, 2017 by fnothaft
@fnothaft
Work on getting Mutect algorithm up and running
#167 opened May 18, 2015 by jstjohn Loading…
31
Add an implementation of Mutect
#114 opened Oct 15, 2014 by tdanford
@tdanford
10
ProTip! no:milestone will show everything without a milestone.