feat: irods download refactoring and new generic sodar downloader with preset for dragen data (#226 ) #224
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: s-weigand/setup-conda@v1, actions/checkout@v2, codecov/codecov-action@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Set up job
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Install Python via conda
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Checkout repository
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Install mamba
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Prepare environment.yaml file
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Update environment using mamba
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Save time by installing packages via mamba.
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Install dependencies
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Run tests
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Run codecov/codecov-action@v3
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Post Checkout repository
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Complete job
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