fix: Always include alfred qc files in input for varfish export bam QC …

…#511
bihealth · Jun 6, 2024 · 39538d0 · 39538d0
1 parent 95b451b
commit 39538d0
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/snappy_pipeline/workflows/varfish_export/__init__.py b/snappy_pipeline/workflows/varfish_export/__init__.py
@@ -421,8 +421,6 @@ def _get_input_files_bam_qc(self, wildcards):
             )
             for key in ("bamstats", "flagstats", "idxstats"):
                 result[key].append(ngs_mapping(tpl % key))
-            if donor.dna_ngs_library.name not in self.parent.ngs_library_to_kit:
-                continue
             path = (
                 f"output/{wildcards.mapper}.{donor.dna_ngs_library.name}/report/alfred_qc/"
                 f"{wildcards.mapper}.{donor.dna_ngs_library.name}.alfred.json.gz"