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Add Delly2 and Manta for sv_calling_targeted #277

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holtgrewe opened this issue Dec 20, 2022 · 0 comments · Fixed by #307
Closed

Add Delly2 and Manta for sv_calling_targeted #277

holtgrewe opened this issue Dec 20, 2022 · 0 comments · Fixed by #307

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@holtgrewe
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holtgrewe commented Dec 20, 2022 •
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Is your feature request related to a problem? Please describe.
We currently do not follow up split read / read pair signal in exomes.

Describe the solution you'd like
We should add Delly2 and Manta in targeted_seq_sv_calling.

Describe alternatives you've considered
N/A

Additional context
N/A
@holtgrewe holtgrewe changed the title Add Delly2 and Manta for targeted_seq_sv_calling Add Delly2 and Manta for sv_calling_wes Dec 28, 2022
@holtgrewe holtgrewe changed the title Add Delly2 and Manta for sv_calling_wes Add Delly2 and Manta for sv_calling_targeted Dec 28, 2022
@holtgrewe holtgrewe changed the title Add Delly2 and Manta for sv_calling_targeted Add Manta for sv_calling_targeted Dec 28, 2022
@holtgrewe holtgrewe changed the title Add Manta for sv_calling_targeted Add Delly2 and Manta for sv_calling_targeted Dec 28, 2022
holtgrewe added a commit that referenced this issue Dec 28, 2022
@holtgrewe
feature: adding manta, delly2 to sv_calling_targeted (#277)
6eba5aa
@holtgrewe holtgrewe linked a pull request Dec 29, 2022 that will close this issue
feat: add delly2 and manta for sv_calling_targeted (#277) #307
Merged
holtgrewe added a commit that referenced this issue Dec 29, 2022
@holtgrewe
feat: add delly2 and manta for sv_calling_targeted (#277) (#307)
99dae5f
@tedil tedil mentioned this issue Jun 28, 2024
Merged
This was referenced Dec 9, 2024
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feat: add delly2 and manta for sv_calling_targeted (#277) bihealth/snappy-pipeline
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@holtgrewe