Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Replace targeted coverage report with "alfred qc" #481

Closed
holtgrewe opened this issue Jan 22, 2024 · 0 comments · Fixed by #482
Closed

Replace targeted coverage report with "alfred qc" #481

holtgrewe opened this issue Jan 22, 2024 · 0 comments · Fixed by #482

Comments

@holtgrewe
Copy link
Member

Is your feature request related to a problem? Please describe.
Our targeted coverage quality control currently uses custom scripts that compute minimal coverage per exon rather than average coverage per exon as common.

Describe the solution you'd like
Replace the custom scripts with calling alfred qc and postprocessing the results.

Describe alternatives you've considered
N/A

Additional context

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant