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fix: gcnv contig wrapper scripts do not clean their output folders (#443) #468

Merged
merged 6 commits into from
Nov 29, 2023
Merged

fix: gcnv contig wrapper scripts do not clean their output folders (#443) #468

merged 6 commits into from
Nov 29, 2023

Commits on Nov 3, 2023

  1. feat: skip unexpected / unknown samples left over from previous GAKT … 

    …DetermineGermlineContigPloidy runs
    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 3, 2023
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Commits on Nov 10, 2023

  1. - remove unkown & not expected samples left over from previous GAKT D… 

    …etermineGermlineContigPloidy runs (instead of skipping them)

- always purge previous output of GCNV call_cnvs_case_mode step when it's run
    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 10, 2023
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Commits on Nov 14, 2023

  1. Fixes for contig_ploidy wrapper

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 14, 2023
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Commits on Nov 15, 2023

  1. Fix writing to log & fix linting

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 15, 2023
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Commits on Nov 21, 2023

  1. change contig_ploidy case mode wrapper to always remove all previous … 

    …results. This is the cleanest (and least error prone) way of stopping any intermixing with previous results.
    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 21, 2023
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  2. Remove unneeded import

    @Nicolai-vKuegelgen
    Nicolai-vKuegelgen committed Nov 21, 2023
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