Merge pull request #85 from bio-ontology-research-group/develop #84

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Python package

	on:
	push:
	branches: [ "main", develop ]
	pull_request:
	branches: [ "main", develop ]

	jobs:
	build:

	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest"]
	python-version: ["3.11"]
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	activate-environment: anaconda-client-env
	environment-file: envs/environment_3_11.yml
	auto-activate-base: false
	channels: conda-forge
	use-mambda: true
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install flake8 pytest coverage pytest-faulthandler
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 mowl --count --exit-zero --max-complexity=20 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	pytest -m "not slow" -p no:faulthandler

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