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22 changes: 6 additions & 16 deletions docs/references.bib
Original file line number Diff line number Diff line change
@@ -1,17 +1,7 @@
@article{Wolf2018,
author = {Wolf, F. Alexander
and Angerer, Philipp
and Theis, Fabian J.},
title = {SCANPY: large-scale single-cell gene expression data analysis},
journal = {Genome Biology},
year = {2018},
month = {Feb},
day = {06},
volume = {19},
number = {1},
pages = {15},
abstract = {Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing, and simulation of gene regulatory networks. Its Python-based implementation efficiently deals with data sets of more than one million cells (https://github.com/theislab/Scanpy). Along with Scanpy, we present AnnData, a generic class for handling annotated data matrices (https://github.com/theislab/anndata).},
issn = {1474-760X},
doi = {10.1186/s13059-017-1382-0},
url = {https://doi.org/10.1186/s13059-017-1382-0}
@proceedings{rohbeckcellij,
author = {Rohbeck, Martin and Qoku, Arber and Treis, Tim and Theis, Fabian J and Velten, Britta and Buettner, Florian and Stegle, Oliver},
title = {Cellij: A Modular Factor Model Framework for Interpretable and Accelerated Multi-Omics Data Integration},
series = {ICML Workshop on Computational Biology},
year = {2023},
url = {https://icml-compbio.github.io/2023/papers/WCBICML2023_paper124.pdf}
}
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