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bioconda · Oct 12, 2024 · 56d6ed0 · 56d6ed0
1 parent 040c953
commit 56d6ed0
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/recipes/vclust/meta.yaml b/recipes/vclust/meta.yaml
@@ -49,8 +49,12 @@ test:
     - pytest
   commands:
     - vclust.py --help
-    - vclust.py prefilter -i example/multifasta.fna -o example/tmp/filter.txt --batch-size 4 --k 18
-    - cmp example/tmp/filter.txt example/output/fltr.txt
+    - vclust.py prefilter -i example/multifasta.fna -o tmp/filter.txt --batch-size 4 --k 18
+    - cmp tmp/filter.txt example/output/fltr.txt
+    - vclust.py align -i example/multifasta.fna -o tmp/ani.tsv
+    - cmp tmp/ani.tsv example/output/ani.tsv
+    - vclust.py cluster -i tmp/ani.tsv -o tmp/clusters.tsv --ids tmp/ani.ids.tsv --tani 0.95
+    - cmp tmp/clusters.tsv example/output/clusters.tsv
     #- pytest test.py                                        # [linux]
     #- pytest test.py -k 'not test_cluster_algorithm_leiden' # [osx]