cellsnp-lite: add aarch64/arm64 build (#50189)

* cellsnp-lite: add aarch64/arm64 build * remove patch * add m4
bioconda · Aug 20, 2024 · 9946b5e · 9946b5e
1 parent ff20431
commit 9946b5e
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diff --git a/recipes/cellsnp-lite/LICENSE b/recipes/cellsnp-lite/LICENSE
diff --git a/recipes/cellsnp-lite/build.sh b/recipes/cellsnp-lite/build.sh
@@ -1,20 +1,18 @@
 #!/bin/bash
 
-export C_INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
-export LD_LIBRARY_PATH=${PREFIX}/lib
-
-./configure
-make
+mkdir -p ${PREFIX}/bin
 
-#cflags="-g -Wall -O2 -Wno-unused-function -fgnu89-inline -I${PREFIX}/include"
+export M4="$BUILD_PREFIX/bin/m4"
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CFLAGS="${CFLAGS} -g -Wall -O3 -Wno-implicit-function-declaration"
 
-#if [ "`uname`" == "Darwin" ]; then
-#    make CC=${CC} CFLAGS="-fgnu89-inline -fcommon ${CFLAGS}" LDFLAGS="${LDFLAGS}"
-#else
-#    make CC=${CC} CFLAGS="${cflags}" htslib_lib_dir=${PREFIX}/lib
-#fi
+autoreconf -if
+./configure --prefix="${PREFIX}" CC="${CC}" CFLAGS="${CFLAGS}" \
+	LDFLAGS="${LDFLAGS}" CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
 
-mkdir -p ${PREFIX}/bin
-cp -f cellsnp-lite ${PREFIX}/bin
+make -j"${CPU_COUNT}"
+make install
 
+chmod 0755 ${PREFIX}/bin/cellsnp-lite