update to new version (#10015)

* update to new version the old version had a bug whereby some reads were dropped. See mourisl/Rcorrector#12 * remove recipe from blacklist * Update meta.yaml * try adding flags per comment from @jpuritz * fix makefile
bioconda · Jul 27, 2018 · b0de30e · b0de30e
1 parent 5d3d35b
commit b0de30e
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Showing 3 changed files with 9 additions and 6 deletions.
diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -1769,8 +1769,6 @@ recipes/pyvcf
 # /usr/bin/env: python -Es: No such file or directory
 recipes/pizzly
 
-# zlib
-recipes/rcorrector
 # compiles its own zlib
 recipes/plink2
 

diff --git a/recipes/rcorrector/build.sh b/recipes/rcorrector/build.sh
@@ -4,6 +4,10 @@ export C_INCLUDE_PATH=$PREFIX/include
 export OBJC_INCLUDE_PATH=$PREFIX/include
 export CPLUS_INCLUDE_PATH=$PREFIX/include 
 export LD_LIBRARY_PATH=$PATH/lib:$LD_LIBRARY_PATH
+export CFLAGS="-I$PREFIX/include"
+export CXXFLAGS="-Wall -O3 -std=c++0x -L$PREFIX/lib"
+
+sed -i.bak 's/CXXFLAGS=.*//' Makefile
 
 make
 mkdir -p $PREFIX/bin

diff --git a/recipes/rcorrector/meta.yaml b/recipes/rcorrector/meta.yaml
@@ -1,17 +1,18 @@
 package:
   name: rcorrector
-  version: 1.0.2
+  version: 1.0.3
 
 source:
-  url: https://github.com/mourisl/Rcorrector/archive/v1.0.2.tar.gz
-  md5: 1030dc9a1e05b0c415318dae0713ec7d
+  url: https://github.com/mourisl/Rcorrector/archive/v1.0.3.tar.gz
+  md5: e64ab705c5b46eba46bce404332db607
 
 build:
-  number: 2
+  number: 0
 
 requirements:
   build:
     - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
   host:
     - jellyfish 2.*
     - zlib