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Add draft wg-blimp-v0.9.0 (#13638)
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* [x] I have read the [guidelines for bioconda recipes](https://bioconda.github.io/guidelines.html).
* [x] This PR adds a new recipe.
* [x] AFAIK, this recipe **is directly relevant to the biological sciences** (otherwise, please submit to the more general purpose [conda-forge channel](https://conda-forge.org/docs/)).
* [ ] This PR updates an existing recipe.
* [ ] This PR does something else (explain below).

This is a first test version, things will likely change until final PR.
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MarWoes authored and bgruening committed Feb 15, 2019
1 parent 4256af7 commit cae45d3
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{% set version = "0.9.0" %}

package:
name: wg-blimp
version: {{ version }}

source:
url: https://github.com/MarWoes/wg-blimp/releases/download/v{{ version }}/wg-blimp-v{{ version }}.tar.gz
sha256: 7508b014dab5674f4b49745c487230fdecbb2b065ef08280234bee1e02604f58

build:
number: 0
noarch: python
script: "{{ PYTHON }} -m pip install . --no-deps -vv"

requirements:
host:
- python >=3.5
- pip
run:
- python >=3.5
- click
- bwameth 0.2.0
- mosdepth
- picard
- samtools
- bwa
- snakemake
- fastqc
- git
- multiqc
- methyldackel
- qualimap
- metilene
- bedtools
- bioconductor-bsseq
- pysam
- h5py
- r-data.table
- r-upsetr
- r-stringr
- r-shiny
- r-shinydashboard
- r-ggplot2
- r-htmlwidgets
- r-dt
- r-httpuv
- ruamel.yaml

test:

commands:
- wg-blimp --help

about:
home: https://github.com/MarWoes/wg-blimp
license: AGPL-3.0
license_family: GPL
license_file: LICENSE
summary: 'wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can be utilised to analyse WGBS data. It performs alignment, qc, methylation calling, DMR calling and DMR annotation using a multitude of tools. '

extra:
container:
# click requires a unicode locale when used with Python 3
# extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
extended-base: true

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