bgreat addition

recipes/bgreat2/build.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+
+export CFLAGS="-I$PREFIX/include"
+export LDFLAGS="-L$PREFIX/lib"
+export CPATH=${PREFIX}/include
+
+
+make zobu="-L${PREFIX}/lib "
+
+mkdir -p $PREFIX/bin
+cp bgreat $PREFIX/bin

recipes/bgreat2/meta.yaml

@@ -0,0 +1,33 @@
+{% set version = "2" %}
+{% set md5 = "b95e4ca6525996e8143fffec98d2cfaa" %}
+
+
+package:
+  name: bgreat
+  version: '{{version}}'
+
+source:
+  url: "https://github.com/Malfoy/BGREAT2/archive/master.zip"
+  md5: '{{md5}}'
+build:
+  number: 1
+  skip: true# [OSX]
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - zlib
+  host:
+    - zlib
+  run:
+    - zlib
+
+test:
+  commands:
+    - bgreat
+
+about:
+  home: https://github.com/Malfoy/BGREAT2
+  license: AGPL-3.0
+  summary: BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)