new tool: orthodb (#51959)

* added orthologer * WIP:orthologer * orthologer * version * minor * orthologer version * updated meta * orthologer 3.2.3 * updated sha256 * Fix SHA256 * minor * spdlog in meta * orthologer: updated cmake OpenMP detection * last macos fixes are now actually there * meta * updated brhclus - now compiles with clang * fix macos * meta/bash macos * even more clang * more cmake and macos issues * updated installer * update build and host section * clean up recipe * updated to new version * path not needed with new version * updated build number * patch not needed anymore * patch not needed anymore * update for new package with macos fix * updated tests and macos fix * new sha256sum * orthologer 3.3.2 * orthologer 3.3.2 - build number reset * sed macos, do not do in place edit * require bash 4.1 - will this work for macos? * orthologer 3.3.2 - bash shebang update (macos) * updated description * version 3.4.0 * upd 3.4.0 * upd 3.4.0 * upd 3.4.0 * upd 3.4.0 * upd 3.4.0 * upd 3.4.0 * version 3.4.1 * update summary * update to orthologer 3.4.2 * update license in meta.yaml * added busco dep * update to 3.5.0 * updated orthologer meta * updated orthologer meta * added orthodb api * fixes according to coderabbit - remove bash requirements * updated requirements * upd requirements (requests) * fix meta.yaml * upd python ver * run_exports readded * run_exports readded --------- Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com> Co-authored-by: mencian <joshua.zhuang@yahoo.com>
bioconda · Nov 6, 2024 · e773238 · e773238
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diff --git a/recipes/orthodb/build.sh b/recipes/orthodb/build.sh
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+#!/bin/bash
+$PYTHON -m pip install . --no-deps --ignore-installed -vv
diff --git a/recipes/orthodb/meta.yaml b/recipes/orthodb/meta.yaml
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+{% set name = "orthodb" %}
+{% set version = "0.9.0" %}
+{% set sha256 = "b1c776e5521c809245696c0c6388f3301d10966707774fc7fecaa4cd40481bd3" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('orthodb', max_pin="x") }}
+
+source:
+  url: https://gitlab.com/ezlab/orthodb_py/-/archive/{{ version }}/orthodb_py-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+files:
+  - LICENSE
+
+requirements:
+  build:
+    - python >=3.7
+    - pip
+    - setuptools
+  host:
+    - python >=3.7
+    - pip
+    - setuptools
+  run:
+    - python >=3.7
+    - requests
+
+test:
+  commands:
+    - python -c 'import orthodb'
+    - python -c 'from orthodb import OdbAPI'
+
+about:
+  home: https://www.ezlab.org/orthodb_v12_userguide.html
+  license: GPL3
+  license_family: GPL3
+  license_file: LICENSE
+  summary: Interface to OrthoDB REST API.
+  description: Python interface to OrthoDB REST API with some additional functionality.
+  dev_url: https://gitlab.com/ezlab/orthodb_py
+  doc_url: https://www.ezlab.org/orthodb_v12_userguide.html#api
+
+extra:
+  identifiers:
+    - biotools:orthodb
+    - doi:10.1093/nar/gkac996
+    - PMID:36350662
+  recipe-maintainers:
+    - ftegenfe
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		#!/bin/bash
		$PYTHON -m pip install . --no-deps --ignore-installed -vv