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agudys authored Oct 16, 2024
1 parent a406834 commit e930050
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13 changes: 0 additions & 13 deletions recipes/vclust/meta.yaml
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Expand Up @@ -41,22 +41,9 @@ about:
license_family: GPL3

test:
#source_files:
# - example/*.*
# - example/output/*.*
#requires:
# - pytest
commands:
- vclust.py --help
- vclust.py info
#- vclust.py prefilter -i example/multifasta.fna -o tmp/filter.txt --batch-size 4 --k 18
#- cmp tmp/filter.txt example/output/fltr.txt
#- vclust.py align -i example/multifasta.fna -o tmp/ani.tsv
#- cmp tmp/ani.tsv example/output/ani.tsv
#- vclust.py cluster -i tmp/ani.tsv -o tmp/clusters.tsv --ids tmp/ani.ids.tsv --tani 0.95
#- cmp tmp/clusters.tsv example/output/clusters.tsv
#- pytest test.py # [linux]
#- pytest test.py -k 'not test_cluster_algorithm_leiden' # [osx]

extra:
additional-platforms:
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