Recipe for kma (#12554)

recipes/kma/build.sh

@@ -0,0 +1,6 @@
+BINARIES="kma kma_index kma_shm kma_update"
+make CFLAGS="-w -O3 -I$PREFIX/include -L$PREFIX/lib"
+
+cp $BINARIES $PREFIX/bin
+mkdir -p $PREFIX/doc/kma
+cp README.md $PREFIX/doc/kma/

recipes/kma/meta.yaml

@@ -0,0 +1,37 @@
+{% set name = "kma" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "ce2e748bd31919d1e1b701417e6bdd944f11deba9263674b77de7255fe60f35a" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://bitbucket.org/genomicepidemiology/{{ name }}/get/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - zlib
+  run:
+    - zlib
+
+test:
+  commands:
+   - kma --help 2>&1|grep KMA >/dev/null
+   - kma_index  --help  2>&1 |grep kma_index
+   - kma_shm --help 2>&1 |grep kma_shm >/dev/null
+   - kma_update --help 2>&1 |grep KMA_update >/dev/null
+
+about:
+  home: https://bitbucket.org/genomicepidemiology/kma
+  summary: 'KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.'
+  license: Apache-2.0
+extra:
+  identifiers:
+    - doi:10.1186/s12859-018-2336-6