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Unblacklist trinotate recipe #10206

Merged
merged 8 commits into from
Aug 3, 2018
Merged

Unblacklist trinotate recipe #10206

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95e09bf
unblacklist trinotate
abretaud Aug 2, 2018
e650ccc
this module needs to be rebuilt
abretaud Aug 2, 2018
707190d
fix broken recipe
abretaud Aug 2, 2018
25da4d5
Merge remote-tracking branch 'upstream/master' into trinotate_bl
abretaud Aug 3, 2018
5eb48fc
fix find command
abretaud Aug 3, 2018
f3128aa
rebuild
abretaud Aug 3, 2018
efcccf3
permission problem
abretaud Aug 3, 2018
9f74836
Update build.sh
bgruening Aug 3, 2018
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3 changes: 0 additions & 3 deletions build-fail-blacklist
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Original file line number Diff line number Diff line change
Expand Up @@ -1547,9 +1547,6 @@ recipes/kat/2.3.1
# oh no TPP is failing, it was a nightmare to get it to compile in the first place :(
recipes/tpp

# missing perl module
recipes/trinotate

# compilation error
recipes/hts-nim-tools

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4 changes: 3 additions & 1 deletion recipes/trinotate/build.sh
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Expand Up @@ -8,7 +8,7 @@ mv util/auto_Trinotate.txt util/auto_Trinotate.sh
cp -rf PerlLib perl-build/lib
cp -rf sample_data ${PREFIX}/trinotate-sample-data

find -name "*.pl" | grep -v sample_data | xargs -I {} cp -rf {} perl-build/scripts/
find . -name "*.pl" | grep -v sample_data | xargs -I {} cp -rf {} perl-build/scripts/
cp Trinotate perl-build/scripts

cd perl-build
Expand All @@ -18,3 +18,5 @@ cp ${RECIPE_DIR}/Build.PL ./
perl ./Build.PL
perl ./Build manifest
perl ./Build install --installdirs site

chmod u+rwx $PREFIX/bin/*
2 changes: 1 addition & 1 deletion recipes/trinotate/meta.yaml
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Expand Up @@ -6,7 +6,7 @@ about:
transcriptomes, from model or non-model organisms'

build:
number: 3
number: 4

package:
name: trinotate
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