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Update snippy to 4.0.0 #10315

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Aug 11, 2018
Merged

Update snippy to 4.0.0 #10315

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3 changes: 3 additions & 0 deletions recipes/snippy/3.2/build.sh
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Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
#!/bin/bash

cp -r bin/* $PREFIX/bin
44 changes: 44 additions & 0 deletions recipes/snippy/3.2/meta.yaml
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@@ -0,0 +1,44 @@
{% set name = "snippy" %}
{% set version = "3.2" %}
{% set hash = "75377acc4687e21d46d773936389e3f0abd8441076d3c9acdd31be13b53352a8" %}

package:
name: {{ name }}
version: "{{ version | replace('-', '_') }}"

source:
sha256: {{ hash }}
url: https://github.com/tseemann/{{ name }}/archive/v{{ version }}.tar.gz

build:
number: 1
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Please bump this to 2.

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Do i have to manually increment this at every build attempt ?

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Hum, you only need to increment it once in the same pull request. It's only when the pull request is merged that the package with this build number is uploaded to anaconda.org


requirements:
run:
- perl
- perl-bioperl
- perl-list-moreutils
- perl-file-slurp
- perl-time-piece
- bwa >=0.7.12
- samtools >=1.3
- bcftools >=1.7
- parallel >=20130422
- freebayes >=1.1
- vcflib
- vcftools >=0.1.14
- snpeff >=4.3

test:
commands:
- snippy --version
- snippy --check

about:
home: https://github.com/tseemann/snippy
license: GPL2
summary: Rapid bacterial SNP calling and core genome alignments

extra:
identifiers:
- biotools:snippy
3 changes: 2 additions & 1 deletion recipes/snippy/build.sh
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
#!/bin/bash

cp -r bin/* $PREFIX/bin
rm -f binaries/{darwin,linux}/*
cp -r * $PREFIX/
27 changes: 16 additions & 11 deletions recipes/snippy/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,38 +1,43 @@
{% set name = "snippy" %}
{% set version = "3.2" %}
{% set hash = "75377acc4687e21d46d773936389e3f0abd8441076d3c9acdd31be13b53352a8" %}
{% set version = "4.0.0" %}
{% set hash = "ccc3839276e8ae9d1807e975803c3593504521f2cd011dfdbcc249b8abf17700" %}

package:
name: {{ name }}
version: "{{ version | replace('-', '_') }}"
version: "{{ version }}"

source:
sha256: {{ hash }}
url: https://github.com/tseemann/{{ name }}/archive/v{{ version }}.tar.gz

build:
number: 1
skip: True # [osx]

requirements:
run:
- perl
- perl-bioperl
- perl-list-moreutils
- perl-file-slurp
- perl-time-piece
- bwa >=0.7.12
- samtools >=1.3
- bcftools >=1.7
- parallel >=20130422
- bwa >=0.7.17
- samtools >=1.8
- bcftools >=1.8
- parallel >=20170422
- freebayes >=1.1
- vcflib
- vcftools >=0.1.14
- snpeff >=4.3
- vt >=0.5772
- snp-sites >=2.4
- emboss >=6.0
- samclip >=0.2
- seqtk >=1.2
- minimap2 >=2.10

test:
commands:
- snippy --version
- snippy --check
- snippy --version
- snippy --check

about:
home: https://github.com/tseemann/snippy
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