Dinucleotide patterns analysis tools v1.0

recipes/dnp-binstrings/build.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+
+sed 's/CPROGNAME/binstrings/g' CMakeLists.template > CMakeLists.txt
+
+mkdir -p  build
+cd build
+
+SEQAN_INCLUDE_PATH="$CONDA_DEFAULT_ENV/include/"
+CMAKE_PREFIX_PATH="$CONDA_DEFAULT_ENV/share/cmake/seqan"
+cmake  ../ -DCMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH" -DSEQAN_INCLUDE_PATH="$SEQAN_INCLUDE_PATH" 
+
+make
+cp binstrings $PREFIX/bin
+

recipes/dnp-binstrings/conda_build_config.yaml

@@ -0,0 +1,6 @@
+c_compiler:
+  - gcc      # [linux]
+  - clang    # [osx]
+cxx_compiler:
+  - gxx       # [linux]
+  - clangxx   # [osx]

recipes/dnp-binstrings/meta.yaml

@@ -0,0 +1,32 @@
+package:
+  name: binstrings
+  version: "1.0"
+
+source:
+  url: https://github.com/erinijapranckeviciene/dnpatterntools/files/2450741/v1.0.tar.gz
+  sha256: 19c46d6bc6a1af70e5a2b4a051aab334026dc38c84b367ea9c445da3fdb21cfe
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake
+  host:
+    - zlib
+    - bzip2
+    - seqan-library
+  run:
+    - zlib
+    - bzip2
+
+test:
+  commands:
+    - binstrings --help 
+
+about:
+  home: https://github.com/erinijapranckeviciene/dnpatterntools
+  license: MIT
+  summary: "Convert fasta strings into dinucleotide binary indicator string as 00101..."

recipes/dnp-corrprofile/build.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+
+sed 's/CPROGNAME/corrprofile/g' CMakeLists.template > CMakeLists.txt
+
+mkdir -p  build
+cd build
+
+SEQAN_INCLUDE_PATH="$CONDA_DEFAULT_ENV/include/"
+CMAKE_PREFIX_PATH="$CONDA_DEFAULT_ENV/share/cmake/seqan"
+cmake  ../ -DCMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH" -DSEQAN_INCLUDE_PATH="$SEQAN_INCLUDE_PATH" 
+
+make
+cp corrprofile $PREFIX/bin
+

recipes/dnp-corrprofile/conda_build_config.yaml

@@ -0,0 +1,6 @@
+c_compiler:
+  - gcc      # [linux]
+  - clang    # [osx]
+cxx_compiler:
+  - gxx       # [linux]
+  - clangxx   # [osx]

recipes/dnp-corrprofile/meta.yaml

@@ -0,0 +1,34 @@
+package:
+  name: corrprofile
+  version: "1.0"
+
+source:
+  url: https://github.com/erinijapranckeviciene/dnpatterntools/files/2450741/v1.0.tar.gz
+  sha256: 19c46d6bc6a1af70e5a2b4a051aab334026dc38c84b367ea9c445da3fdb21cfe
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - seqan-library
+    - cmake
+
+  host:
+    - zlib
+    - bzip2
+
+  run:
+    - zlib
+    - bzip2
+
+test:
+  commands:
+    - corrprofile --help 
+
+about:
+  home: https://github.com/erinijapranckeviciene/dnpatterntools
+  license: MIT
+  summary: "Profile of correlations between the patterns of dinucleotide frequency on forward and reverse strands"

recipes/dnp-diprofile/build.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+
+sed 's/CPROGNAME/diprofile/g' CMakeLists.template > CMakeLists.txt
+
+mkdir -p  build
+cd build
+
+SEQAN_INCLUDE_PATH="$CONDA_DEFAULT_ENV/include/"
+CMAKE_PREFIX_PATH="$CONDA_DEFAULT_ENV/share/cmake/seqan"
+cmake  ../ -DCMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH" -DSEQAN_INCLUDE_PATH="$SEQAN_INCLUDE_PATH" 
+
+make
+cp diprofile $PREFIX/bin
+

recipes/dnp-diprofile/conda_build_config.yaml

@@ -0,0 +1,6 @@
+c_compiler:
+  - gcc      # [linux]
+  - clang    # [osx]
+cxx_compiler:
+  - gxx       # [linux]
+  - clangxx   # [osx]

recipes/dnp-diprofile/meta.yaml

@@ -0,0 +1,34 @@
+package:
+  name: diprofile
+  version: "1.0"
+
+source:
+  url: https://github.com/erinijapranckeviciene/dnpatterntools/files/2450741/v1.0.tar.gz
+  sha256: 19c46d6bc6a1af70e5a2b4a051aab334026dc38c84b367ea9c445da3fdb21cfe
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - seqan-library
+    - cmake
+
+  host:
+    - zlib
+    - bzip2
+
+  run:
+    - zlib
+    - bzip2
+
+test:
+  commands:
+    - diprofile --help 
+
+about:
+  home: https://github.com/erinijapranckeviciene/dnpatterntools
+  license: MIT
+  summary: "Dinucleotide frequency of occurrence in a batch of fasta sequences"

recipes/dnp-fourier/build.sh

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+#!/bin/bash
+
+make fourier
+cp fourier $PREFIX/bin

recipes/dnp-fourier/meta.yaml

@@ -0,0 +1,28 @@
+package:
+  name: fourier
+  version: "1.0"
+
+source:
+  url: https://github.com/erinijapranckeviciene/dnpatterntools/files/2450741/v1.0.tar.gz
+  sha256: 19c46d6bc6a1af70e5a2b4a051aab334026dc38c84b367ea9c445da3fdb21cfe
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+
+  host:
+
+  run:
+
+test:
+  commands:
+    - fourier --help 
+
+about:
+  home: https://github.com/erinijapranckeviciene/dnpatterntools
+  license: MIT
+  summary: "Periodogram of dinucleotide frequency pattern"