blockclust

recipes/blockclust/build.sh

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+sed -i.bak "s/CXX=g++//" Makefile
+make
+mkdir -p ${PREFIX}/bin
+mkdir -p ${PREFIX}/share/blockclust_data
+cp blockclust scripts/blockclust.py scripts/blockclust_plot.r ${PREFIX}/bin
+cp blockclust_data/blockclust.config blockclust_data/rfam_map.txt ${PREFIX}/share/blockclust_data
+

recipes/blockclust/conda_build_config.yaml

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+c_compiler:
+  - gcc      # [linux]
+  - clang    # [osx]
+cxx_compiler:
+  - gxx      # [linux]
+  - clangxx  # [osx]

recipes/blockclust/meta.yaml

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+package:
+  name: blockclust
+  version: 1.1.0
+
+source:
+  git_url: https://github.com/pavanvidem/blockclust
+  git_rev: c4b8a985fcb615b2b4356a242ff1bc60b672f8e1
+
+build:
+  number: 0
+  skip: True  # [osx]
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+  run:
+    - python
+    - scikit-learn >=0.20.0
+    - r-dendextend >=1.8.0
+    - mcl >=14.137
+    - eden >=1.1
+    - pysam >=0.15.0
+
+test:
+  commands:
+    blockclust 2>&1 | grep "clustering and classification" >/dev/null
+
+about:
+  home: https://github.com/pavanvidem/blockclust
+  license: GPL
+  license_file: LICENSE
+  summary: Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btu270
+  skip-lints:
+    - uses_git_url
+    - missing_hash

recipes/blockclust/post-link.sh

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+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/celWS235.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/tair10.tar.gz -P ${PREFIX}/share/blockclust_data
+wget https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/models.tar.gz -P ${PREFIX}/share/blockclust_data
+
+for i in ${PREFIX}/share/blockclust_data/*.tar.gz; do tar -xf $i -C ${PREFIX}/share/blockclust_data;rm $i;done

recipes/blockclust/pre-unlink.sh

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+rm -rf ${PREFIX}/share/blockclust_data