Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add recipe for SNVer 0.5.3 #12265

Merged
merged 8 commits into from
Dec 11, 2018
Merged
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Change command names of wrapper scripts to lowercase
  • Loading branch information
cwuensch committed Nov 26, 2018
commit 0007bd87af720139bb24fa401d2c433a3cf49683
8 changes: 4 additions & 4 deletions recipes/snver/build.sh
Original file line number Diff line number Diff line change
@@ -7,7 +7,7 @@ mkdir -p $PREFIX/bin
cp -R * $outdir/
cp $RECIPE_DIR/SNVerIndividual.py $outdir/SNVerIndividual.py
cp $RECIPE_DIR/SNVerPool.py $outdir/SNVerPool.py
ln -s $outdir/SNVerIndividual.py $PREFIX/bin/SNVerIndividual
ln -s $outdir/SNVerPool.py $PREFIX/bin/SNVerPool
chmod 0755 "${PREFIX}/bin/SNVerIndividual"
chmod 0755 "${PREFIX}/bin/SNVerPool"
ln -s $outdir/SNVerIndividual $PREFIX/bin/snver
ln -s $outdir/SNVerPool.py $PREFIX/bin/snver-pool
chmod 0755 "${PREFIX}/bin/snver"
chmod 0755 "${PREFIX}/bin/snver-pool.py"
6 changes: 3 additions & 3 deletions recipes/snver/meta.yaml
Original file line number Diff line number Diff line change
@@ -30,8 +30,8 @@ requirements:

test:
commands:
- SNVerIndividual
- SNVerPool
- snver
- snver-pool

extra:
notes: |
@@ -40,4 +40,4 @@ extra:
"-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can
specify these values directly after your binaries. If you have _JAVA_OPTIONS
set globally this will take precedence.
For example run it with "SNVerIndividual -Xms512m -Xmx1g"
For example run it with "snver -Xms512m -Xmx1g"