Pathogist

recipes/pathogist/build.sh

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+#!/bin/bash
+
+cp $RECIPE_DIR/setup.py ./
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt

recipes/pathogist/meta.yaml

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+{% set version = "0.2.3" %}
+package:
+  name: pathogist
+  version: {{ version }}
+
+source:
+  url: https://github.com/WGS-TB/PathOGiST/archive/v{{ version }}.tar.gz
+  sha256: 787bee8709e9831bbf60fccd832a5cb489d012d7c864fc82f8e577da5f870645
+
+build:
+  number: 0
+  noarch: python
+
+requirements:
+  host:
+    - python 3.5
+  run:
+    - python 3.5
+    - numpy >=1.15.1
+    - scipy >=1.1.0
+    - pandas >=0.23.4
+    - scikit-learn >=0.19.1
+    - pyyaml >=3.13 
+    - pulp >=1.6.8
+    - networkx
+    - matplotlib
+    - coincbc >=2.9.9
+    - mentalist
+    - prince
+    - snippy ==3.2
+
+test:
+  commands:
+    - PATHOGIST -h
+
+about:
+  home: https://github.com/WGS-TB/PathOGiST
+  summary: Calibrated multi-criterion genomic analysis for public health microbiology
+  license: GPL-3.0
+  license_file: LICENSE

recipes/pathogist/setup.py

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+from setuptools import setup
+
+setup(
+    name='pathogist',
+    version='0.2.2',
+    description='A pipeline for the multi-criterion genomic analysis of bacterial pathogens',
+    url='https://github.com/WGS-TB/PathOGiST',
+    packages=['pathogist'],
+    scripts=['PATHOGIST'])