Atlas

recipes/metagenome-atlas/meta.yaml

@@ -11,9 +11,10 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 0
+  number: 1
   entry_points:
-    - atlas=atlas.main:cli
+    - atlas=atlas.atlas:cli
+
 
 requirements:
   build:
@@ -39,21 +40,37 @@ test:
   imports:
     atlas
   # commands:
-  #   - atlas --version
-  #   - atlas init --help
-  #   - atlas run --help
-# extra:
-#   container:
-#     # click requires a unicode locale when used with Python 3
-#     # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
-#     extended-base: true
+  #   - LANG=en_US.utf8 atlas --version
+  #   - LANG=en_US.utf8 atlas init --help
+  #   - LANG=en_US.utf8 atlas run --help
 
 about:
   home: https://github.com/metagenome-atlas
   license: BSD-3-Clause
   license_family: BSD
   summary: |
     ATLAS - Three commands to start analysing your metagenome data
+
+  description: |
+    Atlas is a easy to use metagenomic pipeline
+    ![scheme of workflow](https://github.com/metagenome-atlas/atlas/blob/f8627545bcfb8f2b55733a35ecd0426ae4bbd5d1/resources/images/ATLAS_scheme.png)
+
+    # Quick Start
+
+    Three commands to start analysing your metagenome data:
+    ```
+        conda install -c bioconda -c conda-forge metagenome-atlas
+        atlas init --db-dir databases path/to/fastq/files
+        atlas run
+    ```
+    All databases and dependencies are installed on the fly in the directory `db-dir`.
+    You want to run these three commands on the example_data on the GitHub repo.
+    If you have more time, then we recommend you configure atlas according to your needs.
+      - check the `samples.tsv`
+      - edit the `config.yaml`
+      - run atlas on any cluster system
+    For more details see documentation.
+
   dev_url: https://github.com/metagenome-atlas/atlas
   doc_url: https://metagenome-atlas.rtfd.io
 extra: