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Blacklist update #18992

Merged
merged 4 commits into from
Nov 29, 2019
Merged

Blacklist update #18992

merged 4 commits into from
Nov 29, 2019

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dpryan79
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@dpryan79 dpryan79 commented Nov 29, 2019

Bioconda requires reviews prior to merging pull-requests (PRs). To facilitate this, once your PR is passing tests and ready to be merged, please add the please review & merge label so other members of the bioconda community can have a look at your PR and either make suggestions or merge it. Note that if you are not already a member of the bioconda project (meaning that you can't add this label), please ping @bioconda/core so that your PR can be reviewed and merged (please note if you'd like to be added to the bioconda project). Please see #15332 for more details.

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

@dpryan79 dpryan79 added the please review & merge set to ask for merge label Nov 29, 2019
@@ -1,4 +1,4 @@
#!/bin/bash

# download the databases required by several options
$PREFIX/bin/download-antismash-databases
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Did it fail with the $PREFIX/bin/ in place? IIRC, older conda versions (<4.6) did not activate the environment. But PREFIX should be available in the script, no matter which conda version.

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It seems to have failed then, yes.

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The link scripts are very awkward in general... Since the previous version with PREFIX would not have worked reliably for conda <4.6 users, I'm okay with this change. (If the users run the install in an already activated environment, everything should be fine.)

@dpryan79
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@bioconda-bot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

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I received an error uploading the build artifacts or merging the PR!

@dpryan79
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@bioconda-bot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@dpryan79
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Sorry bot, you're taking too long.

@dpryan79 dpryan79 merged commit 2cd2f29 into master Nov 29, 2019
@dpryan79 dpryan79 deleted the blacklist_291119 branch November 29, 2019 18:54
@mbargull
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Whoa, https://quay.io/repository/biocontainers/antismash?tag=latest&tab=tags

4.0.2--py27_3 ... 4.7 GB

that's a fat one, no wonder!

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I received an error uploading the build artifacts or merging the PR!

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Yeah, I think we should update the timeout to 30 minutes, or maybe even an hour. I bet the container doesn't get uploaded by the master branch either.

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3 participants