Use extended base for quast

[mvdbeek]

Otherwise fails with

Traceback (most recent call last):
  File "/usr/local/bin/quast", line 307, in <module>
    return_code = main(sys.argv[1:])
  File "/usr/local/bin/quast", line 149, in main
    icarus_gc_fpath, circos_gc_fpath = basic_stats.do(ref_fpath, contigs_fpaths, os.path.join(output_dirpath, 'basic_stats'), output_dirpath)
  File "/usr/local/opt/quast-5.0.2/quast_libs/basic_stats.py", line 263, in do
    html_saver.save_contigs_lengths(results_dir, contigs_fpaths, corr_lists_of_lengths)
  File "/usr/local/opt/quast-5.0.2/quast_libs/html_saver/html_saver.py", line 475, in save_contigs_lengths
    append(results_dirpath, json_fpath, 'contigsLengths')
  File "/usr/local/opt/quast-5.0.2/quast_libs/html_saver/html_saver.py", line 220, in append
    init(html_fpath)
  File "/usr/local/opt/quast-5.0.2/quast_libs/html_saver/html_saver.py", line 115, in init
    script_texts.append(js_html(aux_f_rel_path))
  File "/usr/local/opt/quast-5.0.2/quast_libs/html_saver/html_saver.py", line 95, in js_html
    return '<script type="text/javascript">\n' + open(get_real_path(script_rel_path)).read() + '\n</script>\n'
  File "/usr/local/lib/python3.5/encodings/ascii.py", line 26, in decode
    return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xef in position 14588: ordinal not in range(128)

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[mvdbeek]

@BiocondaBot please add label

[bgruening]

@BiocondaBot please merge

[mvdbeek]

Hmm, looks like no new biocontainer was published, any idea what's up with that ?

[bgruening]

Looks like the bioconda package was also not updated: https://anaconda.org/bioconda/quast/files

If this happens, this is usually because the package is blacklisted. Remove this line in a new PR and please make some whitespace changes in the recipe: https://github.com/bioconda/bioconda-recipes/blob/master/build-fail-blacklist#L81

[mbargull]

fixed in gh-23218