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Update ngs_te_mapper2 #29839

Merged
merged 2 commits into from
Jul 29, 2021
Merged

Update ngs_te_mapper2 #29839

merged 2 commits into from
Jul 29, 2021

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shunhuahan
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  • The initial testing of ngs_te_mapper2 in bioconda revealed samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory error, which is a conda dependency issue.
  • Updating samtools version from 1.7 to 1.9 can fix the issue (Also see [BUG] Samtools shared library libcrypto.so.1.0.0 not found  merenlab/anvio#1479 (comment)).
  • ngs_te_mapper2 meta.yaml has been updated to require samtools=1.9 as dependency.

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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
noarch ngs_te_mapper2-1.0.2-pyhdfd78af_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://163662-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
ngs_te_mapper2 1.0.2--pyhdfd78af_1
showcurl -L "https://163662-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/ngs_te_mapper2%3A1.0.2--pyhdfd78af_1.tar.gz" | gzip -dc | docker load

@shunhuahan
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@BiocondaBot please fetch artifacts

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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
noarch ngs_te_mapper2-1.0.2-pyhdfd78af_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://163662-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
ngs_te_mapper2 1.0.2--pyhdfd78af_1
showcurl -L "https://163662-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/ngs_te_mapper2%3A1.0.2--pyhdfd78af_1.tar.gz" | gzip -dc | docker load

@shunhuahan
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shunhuahan commented Jul 29, 2021

  • The artifacts built on CircleCI works during local testing.

@shunhuahan
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Jul 29, 2021
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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
noarch ngs_te_mapper2-1.0.2-pyhdfd78af_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://163666-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
ngs_te_mapper2 1.0.2--pyhdfd78af_1
showcurl -L "https://163666-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/ngs_te_mapper2%3A1.0.2--pyhdfd78af_1.tar.gz" | gzip -dc | docker load

@dpryan79
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@bioconda-bot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit d3d414d into bioconda:master Jul 29, 2021
@shunhuahan shunhuahan deleted the fix_ngs2 branch July 29, 2021 21:28
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3 participants